Biothings
WebOct 19, 2024 · The BioThings APIs are a collection of high-performance, scalable, annotation as a service APIs that automate the integration of biological annotations from … WebBioThings Explorer is the "Google Maps" for biologists. It utilizes SmartAPI Specifications to build a network of APIs. And by traversing through the network, BioThings Explorer could help user identify potential paths …
Biothings
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WebThe query engine we developed for MyGene.info can be easily adapted to provide the high-performance and flexible query interface for programmatic access. MyGene.info follows the same spirit, but for gene annotations. It currently serves ~3M request per month. User contributions of variant annotations WebBioThings SDK uses MongoDB as the “staging” storage backend for JSON objects before they are sent to Elasticsearch for indexing. You must a have working MongoDB instance you can connect to. We’ll also perform some basic commands. You also have to install the latest stable BioThings SDK release, with pip from PyPI: pip install biothings
WebJan 16, 2024 · BioThings API provides three components in its API development ecosystem. First, it provides a family of high-performance APIs for accessing up-to-date … WebA npm workspace setup for local development environment with all biothings explorer nodejs packages Shell 0 Apache-2.0 6 0 1 Updated Apr 6, 2024. mygeneset.info-website …
WebFrom an architecture perspective, biothings.web.query is one of the data services, built on top of the biothings.web.connections layer, however, due to the complexity of the module, it is escalated one level in organization to simplify the overall folder structure. The features are available in biothings.web.services.query namespace via import. WebFor any given “ BioThings ” type, BioThings SDK helps developers to aggregate annotations from multiple data sources, and expose them as a clean and high …
WebJan 10, 2024 · The BioThings SDK has been used to build over 50 APIs which collectively includes and exposes over 1.7 billion records (Supplementary Table S1). The SDK is …
WebDec 20, 2024 · Example of current MyChem structure vs association-based structure Background. ANG1005 (CHEMBL1089636) has two drug-mechanisms that are different categories: BINDING AGENT for Prolow-density lipoprotein receptor-related protein 1 (chembl target CHEMBL4630884 aka Q07954); INHIBITOR for tubulin (chembl target … novela world twitterWebMy job includes development of http://myvariant.info/ and Biothings framework. Activity I am excited to share I have successfully Defended … novela william levyWebbiocode.things Classes here represent biological things (as defined by the Sequence Ontology) in a way that makes more sense biologically and hiding some of the CS abstraction. What does this mean? This is a simple example, but … how to solve sigma notation arithmetic seriesWebThey were built using BioThings SDK and follow the same design pattern of our official BioThings APIs (MyGene.info, MyVariant.info, MyChem.info, etc). These APIs are … novela websiteWebIn each node of message.knowledge_graph.nodes, there is a name property that is used by the ARAX UI as a human-readable label. I believe BTE populates that field using the SRI Node Normalization se... novelab thoisseyWebBioThings Explorer allows users to query a vast amount of biological and chemical databases in a central place by calling APIs which distribute these data on the fly. Query … novela yawar fiestaWebDec 3, 2024 · If we went back to the older way that queryResult.update(records) worked -- where we called it every time we received a partial, incremental batch of records -- we could potentially fail fast if the results exploded, not needing to wait to get all records from every endpoint before failing.. This would require changes to query_results.js and would … how to solve sigma notation problems